Contents Menu Expand Light mode Dark mode Auto light/dark, in light mode Auto light/dark, in dark mode Skip to content
gedi2py
gedi2py

Getting Started

  • Installation
  • User Guide
    • Quick Start
    • Basic Workflow
    • Batch Correction

API Reference

  • API Reference
    • Core
    • Tools (gd.tl)
      • gedi2py.tools.gedi
      • gedi2py.tools.get_projection
      • gedi2py.tools.compute_zdb
      • gedi2py.tools.compute_db
      • gedi2py.tools.compute_adb
      • gedi2py.tools.svd
      • gedi2py.tools.pca
      • gedi2py.tools.umap
      • gedi2py.tools.impute
      • gedi2py.tools.variance
      • gedi2py.tools.dispersion
      • gedi2py.tools.differential
      • gedi2py.tools.diff_q
      • gedi2py.tools.diff_o
      • gedi2py.tools.pathway_associations
      • gedi2py.tools.pathway_scores
      • gedi2py.tools.top_pathway_genes
      • gedi2py.tools.vector_field
      • gedi2py.tools.gradient
      • gedi2py.tools.pseudotime
    • Plotting (gd.pl)
      • gedi2py.plotting.embedding
      • gedi2py.plotting.umap
      • gedi2py.plotting.pca
      • gedi2py.plotting.convergence
      • gedi2py.plotting.loss
      • gedi2py.plotting.features
      • gedi2py.plotting.metagenes
      • gedi2py.plotting.dispersion
      • gedi2py.plotting.variance_explained
    • I/O (gd.io)
      • gedi2py.io.read_h5ad
      • gedi2py.io.read_10x_h5
      • gedi2py.io.read_10x_mtx
      • gedi2py.io.write_h5ad
      • gedi2py.io.save_model
      • gedi2py.io.load_model
Back to top
Copyright © 2026, CSGLab
Made with Sphinx and @pradyunsg's Furo