gedi2py.plotting.pca

gedi2py.plotting.pca(adata, *, color=None, components=(1, 2), key='gedi', **kwargs)

Plot GEDI PCA embedding.

Parameters:

• adata (AnnData) – Annotated data matrix.

• color (Union[str, Sequence[str], None], default: None) – Key(s) for annotation to color by.

• components (tuple[int, int], default: (1, 2)) – Which principal components to plot (1-indexed).

• key (str, default: 'gedi') – Key prefix for GEDI results.

• **kwargs – Additional arguments passed to embedding().

Return type:

Figure | Axes | list[Axes] | None

:param See embedding() for full parameter documentation.: