gedi2py.io.save_model

gedi2py.io.save_model(adata, filename, *, key='gedi', compression='gzip')[source]

Save GEDI model parameters to file.

Saves the GEDI model parameters stored in adata.uns[key] to a separate file for later loading.

Parameters:

  • adata (AnnData) – Annotated data matrix with GEDI results.

  • filename (str | Path) – Path to output file (will use .npz format).

  • key (str, default: 'gedi') – Key in adata.uns where GEDI results are stored.

  • compression (str, default: 'gzip') – Compression for numpy save.

Return type:

None

Examples

>>> import gedi2py as gd
>>> gd.tl.gedi(adata, batch_key="sample")
>>> gd.io.save_model(adata, "gedi_model.npz")