gedi2py.io.write_h5ad

gedi2py.io.write_h5ad(adata, filename, *, compression='gzip', compression_opts=None)

Write AnnData to H5AD file.

Wrapper around anndata.AnnData.write_h5ad() with consistent interface.

Parameters:

• adata (AnnData) – Annotated data matrix to write.

• filename (str | Path) – Path to output H5AD file.

• compression (str | None, default: 'gzip') – Compression algorithm. Options: 'gzip', 'lzf', None.

• compression_opts (int | None, default: None) – Compression level (for gzip, 1-9).

Return type:

None

Examples

>>> import gedi2py as gd
>>> gd.write_h5ad(adata, "results.h5ad")