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multigedi
multigedi

Getting Started

  • Installation
  • User Guide
    • Quick Start
    • Basic Workflow
    • Batch Correction

API Reference

  • API Reference
    • Core
    • Tools (gd.tl)
      • multigedi.tools.gedi
      • multigedi.tools.get_projection
      • multigedi.tools.compute_zdb
      • multigedi.tools.compute_db
      • multigedi.tools.compute_adb
      • multigedi.tools.svd
      • multigedi.tools.pca
      • multigedi.tools.umap
      • multigedi.tools.impute
      • multigedi.tools.variance
      • multigedi.tools.dispersion
      • multigedi.tools.differential
      • multigedi.tools.diff_q
      • multigedi.tools.diff_o
      • multigedi.tools.pathway_associations
      • multigedi.tools.pathway_scores
      • multigedi.tools.top_pathway_genes
      • multigedi.tools.vector_field
      • multigedi.tools.gradient
      • multigedi.tools.pseudotime
    • Plotting (gd.pl)
      • multigedi.plotting.embedding
      • multigedi.plotting.umap
      • multigedi.plotting.pca
      • multigedi.plotting.convergence
      • multigedi.plotting.loss
      • multigedi.plotting.features
      • multigedi.plotting.metagenes
      • multigedi.plotting.dispersion
      • multigedi.plotting.variance_explained
    • I/O (gd.io)
      • multigedi.io.read_h5ad
      • multigedi.io.read_10x_h5
      • multigedi.io.read_10x_mtx
      • multigedi.io.write_h5ad
      • multigedi.io.save_model
      • multigedi.io.load_model
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