Index _ | C | D | E | F | G | I | L | M | N | O | P | R | S | T | U | V | W _ __init__() (multigedi.GEDIModel method) C compute_adb() (in module multigedi.tools), [1] compute_db() (in module multigedi.tools), [1] compute_zdb() (in module multigedi.tools), [1] convergence() (in module multigedi.plotting), [1] D diff_o() (in module multigedi.tools), [1] diff_q() (in module multigedi.tools), [1] differential() (in module multigedi.tools), [1] dispersion() (in module multigedi.plotting), [1] (in module multigedi.tools), [1] E embedding() (in module multigedi.plotting), [1] F features() (in module multigedi.plotting), [1] G gedi() (in module multigedi.tools), [1] GEDIModel (class in multigedi) get_Bi() (multigedi.GEDIModel method) get_D() (multigedi.GEDIModel method) get_latent_representation() (multigedi.GEDIModel method) get_projection() (in module multigedi.tools), [1] get_sigma2() (multigedi.GEDIModel method) get_tracking() (multigedi.GEDIModel method) get_Z() (multigedi.GEDIModel method) gradient() (in module multigedi.tools), [1] I impute() (in module multigedi.tools), [1] initialize() (multigedi.GEDIModel method) is_trained (multigedi.GEDIModel attribute) (multigedi.GEDIModel property) L load_model() (in module multigedi.io), [1] loss() (in module multigedi.plotting), [1] M metagenes() (in module multigedi.plotting), [1] module multigedi.io multigedi.plotting multigedi.tools multigedi.io module multigedi.plotting module multigedi.tools module N n_iter (multigedi.GEDIModel attribute) n_jobs (in module multigedi) O optimize() (multigedi.GEDIModel method) P pathway_associations() (in module multigedi.tools), [1] pathway_scores() (in module multigedi.tools), [1] pca() (in module multigedi.plotting), [1] (in module multigedi.tools), [1] pseudotime() (in module multigedi.tools), [1] R random_state (in module multigedi) read_10x_h5() (in module multigedi.io), [1] read_10x_mtx() (in module multigedi.io), [1] read_h5ad() (in module multigedi.io), [1] S save_model() (in module multigedi.io), [1] settings (in module multigedi) svd() (in module multigedi.tools), [1] T top_pathway_genes() (in module multigedi.tools), [1] train() (multigedi.GEDIModel method) U umap() (in module multigedi.plotting), [1] (in module multigedi.tools), [1] V variance() (in module multigedi.tools), [1] variance_explained() (in module multigedi.plotting), [1] vector_field() (in module multigedi.tools), [1] verbosity (in module multigedi) W write_h5ad() (in module multigedi.io), [1]