Save Quantification Results

Save transcript quantification results to files. Creates both an RDS file with the full result object and a CSV file with TPM values.

mpaqt_save_result(
  result,
  output_dir,
  prefix = "mpaqt",
  include_abundances = FALSE,
  include_uncertainty = FALSE
)

Arguments

result

An mpaqt_quant_result object

output_dir

Output directory

prefix

File name prefix (default: "mpaqt")

include_abundances

Include raw abundances in CSV (default: FALSE)

include_uncertainty

Include uncertainty in CSV (default: FALSE)

Value

Invisibly returns the paths to created files

Examples

if (FALSE) { # \dontrun{
result <- mpaqt_quant(index, sr_counts)
mpaqt_save_result(result, output_dir = "results", prefix = "sample1")
} # }